TopHat

Version: 
2.1.1
Description: 

TopHat is a fast splice junction mapper for RNA-Seq reads. It aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons. 

Compiled by: 
Ali Siavosh-Haghighi
Compilation Notes: 

Prerequisites: bowtie and samtools.
Go back to software main page.

Research Area: 
Biology